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Summary MyCeno (Mycology of the Cenozoic) 1.0 contains 4,209 records of fossil fungi from the Cenozoic era (66 million years ago to present), from around the world. This dataset consists of records of palynomorphs (spores, and other microscopic fossils), as well as fungal macrofossils. Every record in the dataset comes with information about the fossil's location, estimated age range, and geology. This includes latitude and longitude coordinates, names or descriptions of the fungal fossil found, the technique used for dating the fossil, a grade given for the level of dating uncertainty, as well as full citations for the primary source and any supporting literature for every record. Additionally, 90% of records have a recorded sediment type, 72% have geological formation/member/bed names, and 83% have a DOI or hyperlink to the primary source. 86% of records have a current valid scientific name attributed to the fossil, with name authors and synonyms listed. For these records, the higher classification (i.e. the closest higher taxonomic classification that the identified fungus belongs to, from family-level upwards) is also recorded, as well as whether or not the genus is extant.  Nearest living relatives have been identified for 20% of records. Fossil ages in the dataset concentrate around the Miocene, but cover different epochs across the Cenozoic.   Usage & Applications This dataset was designed to be easy to use. Each variable has its own column, and the table is uploaded as a comma-separated values (CSV) file so that it can be opened using various programmes (flexible for different user preferences). For example, it can be opened in Microsoft Excel, or can be viewed and manipulated using code such as in RStudio. This dataset will prove valuable to people interested in studying ancient fungal diversity, understanding the evolution of fungi, or reconstructing palaeoecology, palaeoenvironments or palaeoclimates. 

Globally, the middle Cenozoic (Oligocene to early Miocene, ~33.9–15.97 Ma) was characterized by a warmer, wetter climate than present. Reconstructing the climate of this stratigraphic interval helps us to better understand the implications of present and future anthropogenically-driven climate change in an Earth system with an established Antarctic ice mass and comparable pCO2 levels (400–700 ppm). Relative to mainland Europe, little palaeoclimate work has been done on the British Isles for this time interval. Compiled middle Cenozoic palynology records from across the British Isles were used to quantitatively reconstruct palaeoclimate, which was then used to define Köppen-Geiger signatures for each palynomorph assemblage. These reconstructions were used to show the presence of a temperate, dry-winter and hot-summer (Cwa) Köppen-Geiger climate type before 31.8 Ma, which was possibly a short-lived event driven by precessional (~26 k.y.) forcing. We attribute reconstructions with dry-winter Köppen-Geiger classifications to combined eccentricity-obliquity-precession (~405 k.y.) forcing, after the Eocene-Oligocene Transition. Declines in Mean Annual Temperature, in Chattian sections, are associated with the Svalbardella-2 and 3 North Sea cooling events. The late Oligocene warming event is shown to have produced tropical rainforest (Af) Köppen-Geiger classification types in the British Isles. Following early Miocene glaciation, a temperate, no-dry-season, warm-summer (Cfb) signature was reconstructed. We suggest the present-day climate of the northwest margin of Europe is comparable to the early Miocene palaeoclimate. Under increased pCO2 concentrations, based on projected twenty-first century anthropogenic warming scenarios, there is potential for wetter summers becoming more prevalent within the next century. 

Hydrologic reconstructions from North America are largely unknown for the Middle Miocene. Examination of fungal palynomorph assemblages coupled with traditional plant-based palynology permits delineation of local, as opposed to regional, climate signals and provides a baseline for study of ancient fungas. Here, the Fungi in a Warmer World project presents paleoecology and paleoclimatology of 351 fungal morphotypes from 3 sites in the United States: the Clarkia Konservat-Lagerstätte site (Idaho), the Alum Bluff site (Florida), and the Bouie River site (Mississippi). Of these, 83 fungi are identified as extant taxa and 41 are newly reported from the Miocene. Combining new plant-based paleoclimatic reconstructions with funga-based paleoclimate reconstructions, we demonstrate cooling and hydrologic changes from the Miocene climate optimum to the Serravallian. In the southeastern United States, this is comparable to that reconstructed with pollen and paleobotany alone. In the northwestern United States, cooling is greater than indicated by other reconstructions and hydrology shifts seasonally, from no dry season to a dry summer season. Our results demonstrate the utility of fossil fungi as paleoecologic and paleoclimatic proxies and that warmer than modern geological time intervals do not match the “wet gets wetter, dry gets drier” paradigm. Instead, both plants and fungi show an invigorated hydrological cycle across mid-latitude North America. 

Abstract Conservation of thermally sensitive species depends on monitoring organismal and population‐level responses to environmental change in real time. Epigenetic processes are increasingly recognized as key integrators of environmental conditions into developmentally plastic responses, and attendant epigenomic data sets hold potential for revealing cryptic phenotypes relevant to conservation efforts. Here, we demonstrate the utility of genome‐wide DNA methylation (DNAm) patterns in the face of climate change for a group of especially vulnerable species, those with temperature‐dependent sex determination (TSD). Due to their reliance on thermal cues during development to determine sexual fate, contemporary shifts in temperature are predicted to skew offspring sex ratios and ultimately destabilize sensitive populations. Using reduced‐representation bisulphite sequencing, we profiled the DNA methylome in blood cells of hatchling American alligators ( Alligator mississippiensis ), a TSD species lacking reliable markers of sexual dimorphism in early life stages. We identified 120 sex‐associated differentially methylated cytosines (DMCs; FDR < 0.1) in hatchlings incubated under a range of temperatures, as well as 707 unique temperature‐associated DMCs. We further developed DNAm‐based models capable of predicting hatchling sex with 100% accuracy (in 20 training samples and four test samples) and past incubation temperature with a mean absolute error of 1.2°C (in four test samples) based on the methylation status of 20 and 24 loci, respectively. Though largely independent of epigenomic patterning occurring in the embryonic gonad during TSD, DNAm patterns in blood cells may serve as nonlethal markers of hatchling sex and past incubation conditions in conservation applications. These findings also raise intriguing questions regarding tissue‐specific epigenomic patterning in the context of developmental plasticity.